PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca15772.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family LBD
Protein Properties Length: 232aa    MW: 25469.1 Da    PI: 6.6902
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca15772.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.72.2e-3971071100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC ++Cv+apyf++eq + +fa++hk+FGasn+ kll +lp ++r++a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+la+lk
  Dca15772.1   7 PCGACKFLRRKCIRGCVFAPYFCHEQgATHFAAIHKVFGASNIAKLLGHLPVSDRSEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVSLQAQLATLK 105
                 7*************************89*********************************************************************99 PP

      DUF260  99 ee 100
                 ++
  Dca15772.1 106 QQ 107
                 98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.1966108IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-377105IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MAGSGSPCGA CKFLRRKCIR GCVFAPYFCH EQGATHFAAI HKVFGASNIA KLLGHLPVSD  60
RSEAAVTISY EAQARLQDPI YGCVSHIFAL QQQVVSLQAQ LATLKQQAIA QNLINGNNST  120
SNPSERYYEK GASSTTNYPQ DVQSWLQSEY PHMVPPFDSN LNCSAESSTI YGDQGGFMNH  180
HINHNSFAHD HSNNDQDVSL ASYEGSSSHQ SKWCFNETDD LHSVAFGYAQ RS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679217.11e-112PREDICTED: LOB domain-containing protein 29
SwissprotQ9M2J72e-66LBD29_ARATH; LOB domain-containing protein 29
TrEMBLA0A0J8F3K91e-112A0A0J8F3K9_BETVU; Uncharacterized protein
STRINGVIT_07s0005g03020.t011e-87(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.12e-53LBD family protein